Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015923710.1_cds_XP_016472253.1_64507
CDS Infomation

[gene=LOC107794282] [db_xref=GeneID:107794282] [protein=26S proteasome non-ATPase regulatory subunit 2 homolog A-like] [protein_id=XP_016472253.1] [location=join(55718..55849,56864..56964,59128..59248,59326..59385,59490..59557,59863..59905,60636..60701,60876..60914,60992..61074,61921..62035,62160..62234,62655..62813,63540..63647,63767..63871,63952..64092,64171..64275,64444..64665,64839..64952,65035..65250,65428..65487,65562..65675,65776..65861,66220..66328,66483..66661,67145..67220)] [gbkey=CDS]
Sequence

ATGTCGAAAACTCCGGATCCGAACAGTACCGGTACTAGCGCCGGCGCCGGGAAACCTACC
GGAGAAGAGGCGACGGTGAAGGTTCCCTCCAAGGATCCAAAGAAGAAGGATGACAAGAAA
GACGAAGATCTATCGGAGGAGGATTTGGCTTTGAAGCAGCAATTGGAACTATATGTGGAG
AGAGTTCAGGATGCAGATCCTGGCCTTCAGAAGGTTGCCCTGGAGAGCATGAGGCAGGAA
ATTCGTACTGCTACAAGCTCCATGACATCGGTCCCAAAACCACTAAAGTTCTTGCGTCCC
CATTATGGAACACTAAAGGGATTTTATGAGAATATGCCGGATTCTGATTTGAAGAAACTT
CTGGCAGATATACTGTCTGTTCTGGCTTTGACAATGTCTGCTGAAGGAGAAAGGGAGAGC
TTGAAGTATAGACTGTTGGGATCTGAAGGTGACATTGGTTCCTGGGGACATGAATATGTT
AGGAACTTGGCTGGAGAAATTGGACAAGAGTATGCAAAACGGCAGAGTGAAGAGGCCCCA
ATAGACGATCTTATGGAGCTTGTGCAACAAATTGTTTCTTTCAACATGAAGCATAATGCC
GAACCTGATGCTGTCGATCTATTAATCGAGGTTGAAGACCTTGATCTCTTGGTGGAGCAT
GTGGATAGCAGCAATTGTAAAAGGACATGTGCCTACCTCACCAGTTTTGCAAAATACCTT
CCTGGACCTGATGACATGTTGGTTCTTGATATTGCATACACTATATACATGAAATTTGAG
GAGTATCCTCTAGCACTTGTGACTGCATTAGCCCTAGACAACATGCAGTCTATAAAGCAA
GTTTTTACGTCATGTGATGATCTTCTACTGAAGAAGCAGTTCTGTTACATCCTTGCTCGC
CATGGTCAAACGTTTGACCTTGATGAAGAGATGTGTGGGGGTGATGAAGAGAGAGAAGGA
TTGCAGGAAATTATTAACAATACGAAATTAAGTGAAGGCTATCTTGCACTTGCTCGTGAT
ATTGAGGTCATGGAACCCAAAACCCCCGATGACATATACAAGCCACATTTGCTTGATGGC
CGAGCTAGTGCGGGAGCAAGTGTCGATTCGGCTAGACAAAATTTGGCTGCTACATTTGTC
AATGCATTTGTCAATGCTGGTTTTGGTCAGGATAAGTTGATGACGGTACCATCAGAGGCC
ACAAGTGGTGGTTCCTCCACAAGCTGGCTTTTCAAAAATAAAGAACATGGCAAGGCTAGT
GCTGCAGCAAGTCTGGGAATGATCCTGCTTTGGGATGTTGATTCTGGGCTTGCACAACTT
GATAAGTATTTCCATAGTACTGATACCCATGTCATTGCTGGTGCACTATTAGGAGTTGGA
ATTGTAAACTGTGGCATCAAGAATGATTGTGATCCAGCATTGGCACTTCTTGCTGAATAT
GTAGACAAAGATGATCCTTCAATTAGAATAGGTGCTATAATGGGCCTGGGTCTTGCTTAT
GCAGGTGCTCAGAATGAGCAGATCAGAAGTATATTGACTCCCATACTTGGAGATAATAAG
GCGTCCCTTGATGTCATTGCATTCGCTGCAATATCATTGGGCTTGGTGTACGTGGGTTCA
TGTAATGAAGAGATTGCCCAGGCAATCATATTTGCATTGATGGAGCGAAGCGAGTCAGAA
TTGGCAGAGCCCCTTGCCCGTCTCTTGCCTCTGGGTCTTGGTCTTTTATACCTTGGGAAG
CAGGAAAGTGTCGAAGCTACAGCTGAAGTTTCGAAAACTTTCCATGAGAAGATCAGAAAG
CATTGTAATATGACCCTGCTTTCTTGTGCCTATGCTGGGACAGGCAACGTACTCAAGGTC
CAACACTTTCTTGGTCAATGTGCTCAACATCTTGAAAAGGGTGAAACCTATCAGGGACCA
GCTGTCCTTGGTATTGCAATGGTAGCAATGTCTGAAGAATTGGGGCTTGAAATGACAATA
CGCTCCCTAGAACATCTTTTGCAGTATGGAGAGCAAAATATTAGAAGAGCAGTTCCGTTG
GCTCTTGCCCTCCTCTGCATATCAAATCCAAAGGTCAATGTCATGGACACACTGAGCAGG
CTTAGTCATGATTCAGACACTGAAGTAGCAATGGCTGCTATCATTTCATTGGGATTGATA
GGTGCCGGAACAAACAATGCTCGAATAGCTGGCATGCTGCGTAACTTGTCCAGTTACTAT
TACAAAGAAGCCAACCTTCTTTTCTGTGTTCGGATCGCCCAAGGTCTTGTCCATTTGGGG
AAGGGCTTGATAACTCTTTCACCATATCATTCTGAACGATTTTTGTTATCTCCGACTGCA
CTGGCTGGACTCGTAACTCTGCTGCACGTATGTCTTGATATGAAGGCCATTATTTTGGGG
AAATACCACTATGTGTTTTACTTTCTGACACTGGCGATGCAGCCAAGGATGCTGATGACT
GTGGATGAGAATTTAAAACCCTTGTCAGTGCCTGTCCGAGTTGGTCAAGCTGTTGATGTT
ATCGGTCAGGCTGGTCGACCGAAGACGATTACGGGTTTCCAGACACACTCAACCCCAGTT
CTCCTTGCTGCTGGGGATCGAGCCGAGCTTGCTACAGAAAAGTACATTCCAATCTCGCCC
ATTCTTGAAGGCTTTGTCATCTTGAAAGAGAATCCCGAGTATAGGGATGACCACTAG

Peptide Sequence

PEP ID

XP_016472253.1
PEP Infomation

PREDICTED: 26S proteasome non-ATPase regulatory subunit 2 homolog A-like [Nicotiana tabacum]
Sequence

MSKTPDPNSTGTSAGAGKPTGEEATVKVPSKDPKKKDDKKDEDLSEEDLALKQQLELYVE
RVQDADPGLQKVALESMRQEIRTATSSMTSVPKPLKFLRPHYGTLKGFYENMPDSDLKKL
LADILSVLALTMSAEGERESLKYRLLGSEGDIGSWGHEYVRNLAGEIGQEYAKRQSEEAP
IDDLMELVQQIVSFNMKHNAEPDAVDLLIEVEDLDLLVEHVDSSNCKRTCAYLTSFAKYL
PGPDDMLVLDIAYTIYMKFEEYPLALVTALALDNMQSIKQVFTSCDDLLLKKQFCYILAR
HGQTFDLDEEMCGGDEEREGLQEIINNTKLSEGYLALARDIEVMEPKTPDDIYKPHLLDG
RASAGASVDSARQNLAATFVNAFVNAGFGQDKLMTVPSEATSGGSSTSWLFKNKEHGKAS
AAASLGMILLWDVDSGLAQLDKYFHSTDTHVIAGALLGVGIVNCGIKNDCDPALALLAEY
VDKDDPSIRIGAIMGLGLAYAGAQNEQIRSILTPILGDNKASLDVIAFAAISLGLVYVGS
CNEEIAQAIIFALMERSESELAEPLARLLPLGLGLLYLGKQESVEATAEVSKTFHEKIRK
HCNMTLLSCAYAGTGNVLKVQHFLGQCAQHLEKGETYQGPAVLGIAMVAMSEELGLEMTI
RSLEHLLQYGEQNIRRAVPLALALLCISNPKVNVMDTLSRLSHDSDTEVAMAAIISLGLI
GAGTNNARIAGMLRNLSSYYYKEANLLFCVRIAQGLVHLGKGLITLSPYHSERFLLSPTA
LAGLVTLLHVCLDMKAIILGKYHYVFYFLTLAMQPRMLMTVDENLKPLSVPVRVGQAVDV
IGQAGRPKTITGFQTHSTPVLLAAGDRAELATEKYIPISPILEGFVILKENPEYRDDH

Transcript Sequence

Gene sequence data has not been registered.